LOC4330713 aquaporin NIP2-1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4330713
Gene description: aquaporin NIP2-1-like
Locus tag: OSNPB_020745100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: Lsi1; SIIT1; NIP2-1; OsNIP2;1; OsJ_008085; OJ1118_G04.16; OJ1734_E02.43
Expression: Biased expression in roots before flowering (RPKM 305.5) and flower buds (RPKM 23.2) See more
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Genomic context

Location:: chromosome: 2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	2	NC_089036.1 (31761480..31765195)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (31266250..31269961)

Chromosome 2 - NC_089036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Structural basis for high selectivity of a rice silicon channel Lsi1.
Title: Structural basis for high selectivity of a rice silicon channel Lsi1.
Structural Basis for Silicic Acid Uptake by Higher Plants.
Title: Structural Basis for Silicic Acid Uptake by Higher Plants.
Root elongation was decreased with increasing external Cd concentrations in both wild types and Lsi1 and Lsi2 mutants, but Si did not show an alleviative effect on Cd toxicity in all lines. By contrast, the Cd concentration in both the shoots and roots was decreased by Si in the WTs, but not in the mutants.
Title: Silicon reduces cadmium accumulation by suppressing expression of transporter genes involved in cadmium uptake and translocation in rice.
Lsi1 plays a key role in rice, increasing the absorption and accumulation of Silicon, then alters antioxidant activities, and improves morphological properties.
Title: Screening and Expression of a Silicon Transporter Gene (Lsi1) in Wild-Type Indica Rice Cultivars.
Low silicon rice 1 (Lsi1) gene controls silicon accumulation in rice and is constitutively expressed in the roots. [lsi1]
Title: A silicon transporter in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables channel activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: aquaporin NIP2-1

Names: LOC_Os02g51110; Low silicon protein 1; NOD26-like intrinsic protein 2-1; NOD26-like major intrinsic protein; Silicon influx transporter LSI1; Silicon transporter LSI1; putative major intrinsic protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.