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    LOC4324401 D-glycerate 3-kinase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324401, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324401
    Gene description
    D-glycerate 3-kinase, chloroplastic
    Locus tag
    OSNPB_010682500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0445E10.1
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    Genomic context

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    See LOC4324401 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28714038..28718343)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28126546..28130273)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene glutamate synthase 1 [NADH], chloroplastic-like Neighboring gene uncharacterized LOC4324399 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene katanin p60 ATPase-containing subunit A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photorespiration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    D-glycerate 3-kinase, chloroplastic
    Names
    Os01g0682500
    P0019E03.36
    phosphoribulokinase/uridine kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28714038..28718343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766757.2 → XP_015622243.1  D-glycerate 3-kinase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0V6S2, B8A7L7, B9EYM4, Q5QLG3
      Conserved Domains (1) summary
      PLN03046
      Location:26 → 418
      PLN03046; D-glycerate 3-kinase; Provisional

    2. XM_066306942.1 → XP_066163039.1  D-glycerate 3-kinase, chloroplastic isoform X2

    Nucleotide Protein
    Heading Accession and Version

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