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    LOC4340503 probable DNA helicase MCM9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340503, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340503
    Gene description
    probable DNA helicase MCM9
    Locus tag
    OSNPB_060218500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MCM9; OsMCM9; P0436F11.6
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    Genomic context

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    See LOC4340503 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6252484..6264798, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6085346..6097679, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340501 Neighboring gene E3 ubiquitin-protein ligase ATL31 Neighboring gene blue copper protein Neighboring gene uncharacterized LOC4340505 Neighboring gene uncharacterized LOC4340506

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MCM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable DNA helicase MCM9
    Names
    LOC_Os06g11500
    Minichromosome maintenance 9
    P0644A02.30
    putative DNA replication licensing factor MCM2
    NP_001389715.1
    XP_015643700.1
    XP_025881970.1
    XP_066167237.1
    XP_066167238.1
    XP_066167239.1
    XP_066167240.1
    XP_066167241.1
    XP_066167242.1
    XP_066167243.1
    XP_066167244.1
    XP_066167245.1
    XP_066167246.1
    XP_066167247.1
    XP_066167248.1
    XP_066167249.1
    XP_066167250.1
    XP_066167251.1
    XP_066167252.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402786.1 → NP_001389715.1  probable DNA helicase MCM9

      Status: VALIDATED

      Source sequence(s)
      AK100667, CI259169, CI643501
      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6252484..6264798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311151.1 → XP_066167248.1  probable DNA helicase MCM9 isoform X2

    2. XM_066311146.1 → XP_066167243.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    3. XM_066311142.1 → XP_066167239.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    4. XM_066311154.1 → XP_066167251.1  probable DNA helicase MCM9 isoform X4

    5. XM_066311149.1 → XP_066167246.1  probable DNA helicase MCM9 isoform X2

    6. XM_066311148.1 → XP_066167245.1  probable DNA helicase MCM9 isoform X2

    7. XM_015788214.3 → XP_015643700.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, B8B406, Q69QA6
      Conserved Domains (2) summary
      COG1241
      Location:20 → 631
      Mcm2; DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair]
      cd17760
      Location:322 → 625
      MCM9; DNA helicase Mcm9

    8. XM_066311140.1 → XP_066167237.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    9. XM_066311144.1 → XP_066167241.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    10. XM_066311143.1 → XP_066167240.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    11. XM_066311152.1 → XP_066167249.1  probable DNA helicase MCM9 isoform X3

    12. XM_066311153.1 → XP_066167250.1  probable DNA helicase MCM9 isoform X3

    13. XM_066311155.1 → XP_066167252.1  probable DNA helicase MCM9 isoform X5

    14. XM_026026185.2 → XP_025881970.1  probable DNA helicase MCM9 isoform X5

      Conserved Domains (1) summary
      COG1241
      Location:20 → 457
      Mcm2; DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair]

    15. XM_066311145.1 → XP_066167242.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    16. XM_066311150.1 → XP_066167247.1  probable DNA helicase MCM9 isoform X2

    17. XM_066311141.1 → XP_066167238.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6

    18. XM_066311147.1 → XP_066167244.1  probable DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WUD0, Q69QA6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69QA6.1 GenPept UniProtKB/Swiss-Prot:Q69QA6

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