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    LOC4328885 transcription factor GTE4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328885, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328885
    Gene description
    transcription factor GTE4
    Locus tag
    OSNPB_020250300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328885 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8515995..8523737)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8490388..8498259)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glutelin type-B 1 Neighboring gene uncharacterized LOC107280107 Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene uncharacterized LOC136355114

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GTE4
    Names
    Os02g0250300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      8515995..8523737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771019.3 → XP_015626505.1  transcription factor GTE4 isoform X1

      UniProtKB/TrEMBL
      Q0E2D1
      Conserved Domains (2) summary
      cd05506
      Location:315 → 413
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:487 → 550
      BET; Bromodomain extra-terminal - transcription regulation

    2. XM_015771020.3 → XP_015626506.1  transcription factor GTE4 isoform X1

      UniProtKB/TrEMBL
      Q0E2D1
      Conserved Domains (2) summary
      cd05506
      Location:315 → 413
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:487 → 550
      BET; Bromodomain extra-terminal - transcription regulation

    3. XM_015771021.3 → XP_015626507.1  transcription factor GTE4 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VH22, A0A8J8XB89, A3A538, Q0E2D1
      Conserved Domains (2) summary
      cd05506
      Location:315 → 413
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:488 → 550
      BET; Bromodomain extra-terminal - transcription regulation

    4. XM_015771023.3 → XP_015626509.1  transcription factor GTE4 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VH22, A0A8J8XB89, A3A538, Q0E2D1
      Conserved Domains (2) summary
      cd05506
      Location:315 → 413
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:488 → 550
      BET; Bromodomain extra-terminal - transcription regulation
    Nucleotide Protein
    Heading Accession and Version

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