LOC4342420 peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4342420
Gene description: peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like
Locus tag: OSNPB_070152900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: GLO5; GOX 3; OsGLO5; OsJ_23125
Expression: Broad expression in leaves before flowering (RPKM 551.9), roots after flowering (RPKM 295.6) and 5 other tissues See more
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Genomic context

Location:: chromosome: 7

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	7	NC_089041.1 (2812118..2815687)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (2797691..2801348)

Chromosome 7 - NC_089041.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data suggest that an alternative pathway to produce glyoxylate, and that the accumulated glyoxylate inhibits photosynthesis by deactivating Rubisco (large and small subunits) in the glycolate oxidase (GLO, NM_001065444))-suppressed plants.
Title: Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables (S)-2-hydroxy-acid oxidase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables FMN binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in peroxisome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: glycolate oxidase 5

Names: B1364A02.33-1; B1364A02.33-2; GOX 5; Glycolate oxidase 5; LOC_Os07g05820; OSJNBb0050B07.1-1; OSJNBb0050B07.1-2; Short chain alpha-hydroxy acid oxidase GLO5; peroxisomal (S)-2-hydroxy-acid oxidase GLO5; putative (S)-2-hydroxy-acid oxidase; putative glycolate oxidase

NP_001389947.1

EC 1.1.3.15

XP_015646860.1

EC 1.1.3.15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001403018.1 → NP_001389947.1 glycolate oxidase 5

Status: VALIDATED

Source sequence(s)

CB646042, CB664710, CI219590

UniProtKB/Swiss-Prot

A0A0P0X2P6, B8B7C5, B9FVJ4, Q6YT73

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089041.1 Reference ASM3414082v1 Primary Assembly

Range

2812118..2815687

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015791374.2 → XP_015646860.1 glycolate oxidase 5 isoform X1

Conserved Domains (2) summary

PLN02979
Location:6 → 336

PLN02979; glycolate oxidase

cd02809
Location:22 → 328

alpha_hydroxyacid_oxid_FMN; Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate ...