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    LOC4350689 protein MRG1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350689, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350689
    Gene description
    protein MRG1
    Locus tag
    OSNPB_110545600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350689 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (22030670..22039438, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (20097659..20106864, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354203 Neighboring gene ubiquitin carboxyl-terminal hydrolase 18 Neighboring gene uncharacterized LOC107276365 Neighboring gene centromere/kinetochore protein zw10 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MRG1
    Names
    Os11g0545600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      22030670..22039438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305577.1 → XP_066161674.1  protein MRG1 isoform X2

      UniProtKB/TrEMBL
      Q2R2X7

    2. XM_066305576.1 → XP_066161673.1  protein MRG1 isoform X2

      UniProtKB/TrEMBL
      Q2R2X7

    3. XM_066305575.1 → XP_066161672.1  protein MRG1 isoform X1

    4. XM_066305574.1 → XP_066161671.1  protein MRG1 isoform X1

    5. XM_015761655.3 → XP_015617141.1  protein MRG1 isoform X2

      UniProtKB/TrEMBL
      B8BKY7, Q2R2X7
      Conserved Domains (2) summary
      cd18983
      Location:20 → 76
      CBD_MSL3_like; chromo barrel domain of human male-specific lethal complex subunit 3, and similar proteins
      pfam05712
      Location:133 → 291
      MRG

    6. XM_015761657.3 → XP_015617143.1  protein MRG1 isoform X1

      UniProtKB/TrEMBL
      B8BKY7
      Conserved Domains (2) summary
      cd18983
      Location:20 → 76
      CBD_MSL3_like; chromo barrel domain of human male-specific lethal complex subunit 3, and similar proteins
      pfam05712
      Location:134 → 292
      MRG

    7. XM_066305578.1 → XP_066161675.1  protein MRG1 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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