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    LOC4327606 uncharacterized LOC4327606 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327606, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327606
    Gene description
    uncharacterized LOC4327606
    Locus tag
    OSNPB_010819900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1529_G03.21-1; OJ1529_G03.21-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 40.4), roots before flowering (RPKM 35.3) and 6 other tissues See more
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    Genomic context

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    See LOC4327606 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35573999..35584202, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34949113..34959350, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327604 Neighboring gene putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial Neighboring gene trans-cinnamate 4-monooxygenase-like Neighboring gene uncharacterized LOC112937431

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327606
    Names
    Os01g0819900
    probable inactive serine/threonine-protein kinase scy1
    putative kinase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35573999..35584202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764898.2 → XP_015620384.1  uncharacterized protein LOC4327606

      UniProtKB/TrEMBL
      B8ABB7, B9FR69, Q0JI70, Q5QLZ5
      Conserved Domains (3) summary
      pfam08070
      Location:713 → 809
      DTHCT; DTHCT (NUC029) region
      sd00044
      Location:330 → 352
      HEAT; HEAT repeat [structural motif]
      cl21453
      Location:26 → 286
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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