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    LOC4347275 probable calcium-binding protein CML15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347275, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347275
    Gene description
    probable calcium-binding protein CML15
    Locus tag
    OSNPB_090458900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347275 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21721109..21721746)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17338396..17339170)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351929 Neighboring gene calmodulin-like protein 30 Neighboring gene uncharacterized LOC9268821 Neighboring gene uncharacterized LOC4347276 Neighboring gene probable BRI1 kinase inhibitor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable calcium-binding protein CML15
    Names
    B1045B05.25
    OSJNBa0054F02.3
    Os09g0458900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      21721109..21721746
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755183.3 → XP_015610669.1  probable calcium-binding protein CML15

      UniProtKB/TrEMBL
      A2Z222, A3BZK0, Q67J26, Q67TZ2
      Conserved Domains (1) summary
      cl08302
      Location:23 → 76
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

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