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    HIRL1 hypersensitive-induced response protein-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339791, updated on 16-Jul-2024

    Summary

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    Gene symbol
    HIRL1
    Gene description
    hypersensitive-induced response protein-like protein 1
    Locus tag
    OSNPB_050591900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_19752; P0663C08.5
    Expression
    Broad expression in roots after flowering (RPKM 248.0), leaves after flowering (RPKM 229.2) and 5 other tissues See more
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    Genomic context

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    See HIRL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29673307..29678757, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29486797..29492171, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8 Neighboring gene receptor-like cytoplasmic kinase 176 Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2 Neighboring gene ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic Neighboring gene plant cysteine oxidase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    hypersensitive-induced response protein-like protein 1
    Names
    OSNPB_050591900
    Os05g0591900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402649.1 → NP_001389578.1  hypersensitive-induced response protein-like protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CB653243, CI004742, CI179630, CI305543
      UniProtKB/TrEMBL
      A0A0P0WR49

    2. NM_001402650.1 → NP_001389579.1  hypersensitive-induced response protein-like protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB653243, CI004742, CI179630, CI286438, CI289680
      UniProtKB/Swiss-Prot
      Q6L4S3
      UniProtKB/TrEMBL
      A0A0P0WR49, A2Y840

    3. NM_001402651.1 → NP_001389580.1  hypersensitive-induced response protein-like protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB653243, CI004742, CI179630, CI291723
      UniProtKB/Swiss-Prot
      Q6L4S3
      UniProtKB/TrEMBL
      A0A0P0WR49, A2Y840

    4. NM_001402652.1 → NP_001389581.1  hypersensitive-induced response protein-like protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB653243, CI004742, CI179630, CI287923
      UniProtKB/Swiss-Prot
      Q6L4S3
      UniProtKB/TrEMBL
      A0A0P0WR49, A2Y840

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29673307..29678757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310290.1 → XP_066166387.1  hypersensitive-induced response protein-like protein 1 isoform X1

    2. XM_066310291.1 → XP_066166388.1  hypersensitive-induced response protein-like protein 1 isoform X2

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6L4S3.1 GenPept UniProtKB/Swiss-Prot:Q6L4S3

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