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    LOC4351427 protein ZINC INDUCED FACILITATOR-LIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351427, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351427
    Gene description
    protein ZINC INDUCED FACILITATOR-LIKE 1
    Locus tag
    OSNPB_120133100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsVMT
    Expression
    Ubiquitous expression in mature seeds (RPKM 9.5), flower buds (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    See LOC4351427 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1630543..1641230, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1606115..1616812, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351425 Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1 Neighboring gene large ribosomal subunit protein uL10-like Neighboring gene WAT1-related protein At5g64700-like Neighboring gene probable peptide/nitrate transporter At3g43790

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable peptide/nitrate transporter At3g43790; protein ZINC INDUCED FACILITATOR-LIKE 1
    Names
    Os12g0133100
    vacuolar mugineic acid transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1630543..1641230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764311.3 → XP_015619797.1  probable peptide/nitrate transporter At3g43790 isoform X3

      UniProtKB/TrEMBL
      A0A0P0Y6N2
      Conserved Domains (2) summary
      cd06174
      Location:54 → 456
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:57 → 448
      MFS_1; Major Facilitator Superfamily

    2. XM_015764309.3 → XP_015619795.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y6N2, H2KWZ0
      Conserved Domains (1) summary
      cd17330
      Location:57 → 456
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    3. XM_066306548.1 → XP_066162645.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X4

    4. XM_015764310.3 → XP_015619796.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XR37, B8BLX7, B9GBR6, H2KWZ1
      Conserved Domains (2) summary
      cd06174
      Location:36 → 438
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:39 → 430
      MFS_1; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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