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    fbxo15 F-box protein 15 [ Danio rerio (zebrafish) ]

    Gene ID: 560664, updated on 2-Nov-2024

    Summary

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    Official Symbol
    fbxo15provided by ZNC
    Official Full Name
    F-box protein 15provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080416-4
    See related
    Ensembl:ENSDARG00000016897 AllianceGenome:ZFIN:ZDB-GENE-080416-4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXO15 (F-box protein 15). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See fbxo15 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (15655211..15669219)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (15510785..15524950)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489224 Neighboring gene cerebellin 2b precursor Neighboring gene uncharacterized LOC137489285 Neighboring gene uncharacterized LOC137489286

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization and expression pattern of ZB and PS transposons in zebrafish. Wang Y, et al. Gene Expr Patterns, 2021 Dec. PMID 34481069
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    F-box only protein 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      15655211..15669219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_684062.9 → XP_689154.4  F-box only protein 15 isoform X1

      UniProtKB/TrEMBL
      A0A8N7TEX1, F1RC48
      Related
      ENSDARP00000042942.7, ENSDART00000042943.8
      Conserved Domains (1) summary
      pfam12937
      Location:54 → 100
      F-box-like; F-box-like

    2. XM_005162660.5 → XP_005162717.1  F-box only protein 15 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B9I7, E9QGX5
      Related
      ENSDARP00000113137.1, ENSDART00000143160.2
      Conserved Domains (1) summary
      pfam12937
      Location:53 → 99
      F-box-like; F-box-like
    Nucleotide Protein
    Heading Accession and Version

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