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    zgc:175214 zgc:175214 [ Danio rerio (zebrafish) ]

    Gene ID: 557610, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zgc:175214provided by ZNC
    Official Full Name
    zgc:175214provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080303-32
    See related
    Ensembl:ENSDARG00000022891 AllianceGenome:ZFIN:ZDB-GENE-080303-32
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:175214 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (49481203..49498286, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (48836783..48853874, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit k Neighboring gene programmed cell death 11 Neighboring gene calcium homeostasis modulator 1 Neighboring gene inositol 1,4,5-trisphosphate receptor-interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC175214

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ring finger protein 122-like; uncharacterized protein LOC557610

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114727.2 → NP_001108199.1  uncharacterized protein LOC557610

      See identical proteins and their annotated locations for NP_001108199.1

      Status: VALIDATED

      Source sequence(s)
      CR812943
      UniProtKB/TrEMBL
      A0A8M1NHS8, B0JZN6
      Conserved Domains (1) summary
      pfam13639
      Location:90 → 130
      zf-RING_2; Ring finger domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      49481203..49498286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005160114.4 → XP_005160171.1  ring finger protein 122-like isoform X1

      UniProtKB/TrEMBL
      B0JZN6
      Related
      ENSDARP00000119883.1, ENSDART00000137357.3
      Conserved Domains (1) summary
      pfam13639
      Location:90 → 130
      zf-RING_2; Ring finger domain
    Nucleotide Protein Strain
    Heading Accession and Version

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