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    si:dkey-25o16.4 si:dkey-25o16.4 [ Danio rerio (zebrafish) ]

    Gene ID: 567619, updated on 2-Nov-2024

    Summary

    Official Symbol
    si:dkey-25o16.4provided by ZNC
    Official Full Name
    si:dkey-25o16.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-969
    See related
    Ensembl:ENSDARG00000096554 AllianceGenome:ZFIN:ZDB-GENE-030131-969
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb54e10; wu:fb54e10
    Summary
    Predicted to act upstream of or within cell division and regulation of attachment of spindle microtubules to kinetochore. Orthologous to human SPAG5 (sperm associated antigen 5). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See si:dkey-25o16.4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (26676776..26700444)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (25983037..26006724)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene hemogen Neighboring gene tRNA methyltransferase O Neighboring gene forkhead box E1 Neighboring gene SH3 domain containing GRB2 like 2a, endophilin A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      26676776..26700444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690920.8XP_696012.4  sperm-associated antigen 5

      UniProtKB/TrEMBL
      A0A8N7TBK5, R4GEI9
      Related
      ENSDARP00000126902.1, ENSDART00000152299.2
      Conserved Domains (3) summary
      pfam12718
      Location:10781216
      Tropomyosin_1; Tropomyosin like
      pfam14662
      Location:9421138
      KASH_CCD; Coiled-coil region of CCDC155 or KASH
      cl19219
      Location:13931477
      DUF342; Protein of unknown function (DUF342)