U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ubap2b ubiquitin associated protein 2b [ Danio rerio (zebrafish) ]

    Gene ID: 570789, updated on 14-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ubap2bprovided by ZNC
    Official Full Name
    ubiquitin associated protein 2bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070209-122
    See related
    Ensembl:ENSDARG00000060065 AllianceGenome:ZFIN:ZDB-GENE-070209-122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb19h07; zgc:158399
    Summary
    Predicted to be active in cytoplasm and nucleus. Orthologous to human UBAP2 (ubiquitin associated protein 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ubap2b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (45293739..45328652)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (45285850..45320777)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100148190 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 13 Neighboring gene poly(A) binding protein, cytoplasmic 1-like Neighboring gene charged multivesicular body protein 4Bb

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. UBAP2 plays a role in bone homeostasis through the regulation of osteoblastogenesis and osteoclastogenesis. Kim J, et al. Nat Commun, 2023 Jun 20. PMID 37339951, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC158399

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-associated protein 2b
    Names
    ubiquitin-associated protein 2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082481.1 → NP_001075950.1  ubiquitin-associated protein 2b

      See identical proteins and their annotated locations for NP_001075950.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133095
      UniProtKB/TrEMBL
      A0A8M1NBS9, A2RUY5
      Related
      ENSDARP00000120289.1, ENSDART00000136234.3
      Conserved Domains (2) summary
      cd14277
      Location:51 → 88
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:457 → 486
      DUF3697; Ubiquitin-associated protein 2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      45293739..45328652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304242.4 → XP_009302517.1  ubiquitin-associated protein 2b isoform X1

      See identical proteins and their annotated locations for XP_009302517.1

      UniProtKB/TrEMBL
      A0A8M2BEK9
      Conserved Domains (2) summary
      cd14277
      Location:51 → 88
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:458 → 487
      DUF3697; Ubiquitin-associated protein 2

    2. XM_005167272.5 → XP_005167329.1  ubiquitin-associated protein 2b isoform X3

      UniProtKB/TrEMBL
      A0A8M2BFB5
      Conserved Domains (2) summary
      cd14277
      Location:51 → 88
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:458 → 487
      DUF3697; Ubiquitin-associated protein 2

    3. XM_068223009.1 → XP_068079110.1  ubiquitin-associated protein 2b isoform X4

    4. XM_005167271.5 → XP_005167328.1  ubiquitin-associated protein 2b isoform X1

      See identical proteins and their annotated locations for XP_005167328.1

      UniProtKB/TrEMBL
      A0A8M2BEK9
      Conserved Domains (2) summary
      cd14277
      Location:51 → 88
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:458 → 487
      DUF3697; Ubiquitin-associated protein 2

    5. XM_068223008.1 → XP_068079109.1  ubiquitin-associated protein 2b isoform X2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394741.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      183379..217942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools