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    si:ch211-98n17.5 si:ch211-98n17.5 [ Danio rerio (zebrafish) ]

    Gene ID: 560439, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch211-98n17.5provided by ZNC
    Official Full Name
    si:ch211-98n17.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160728-87
    See related
    Ensembl:ENSDARG00000105641 AllianceGenome:ZFIN:ZDB-GENE-160728-87
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb50h02; wu:fb50h02
    Summary
    Predicted to be located in membrane. Orthologous to human MUC15 (mucin 15, cell surface associated). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-98n17.5 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (34256513..34265481, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (33985405..33999001, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene timeless interacting protein Neighboring gene DIS3 like exosome 3'-5' exoribonuclease Neighboring gene fin bud initiation factor b Neighboring gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine-rich 25 kDa antigen protein; uncharacterized protein si:ch211-98n17.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      34256513..34265481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477875.2 → XP_021333550.1  serine-rich 25 kDa antigen protein

      UniProtKB/TrEMBL
      A0A1D5NS46, A0A8M9QHU0
      Related
      ENSDARP00000142655.1, ENSDART00000173596.2
      Conserved Domains (1) summary
      pfam15672
      Location:72 → 328
      Mucin15; Cell-membrane associated Mucin15

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394698.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      221804..230831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471992.2 → XP_021327667.1  uncharacterized protein si:ch211-98n17.5

      UniProtKB/TrEMBL
      A0A2R8Q219, A0A8M9P9Q6
      Conserved Domains (1) summary
      pfam15672
      Location:72 → 328
      Mucin15; Cell-membrane associated Mucin15
    Nucleotide Protein Strain
    Heading Accession and Version

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