ankrd54 ankyrin repeat domain 54 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ankrd54provided by ZNC
Official Full Name: ankyrin repeat domain 54provided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-318
See related: Ensembl:ENSDARG00000055743 AllianceGenome:ZFIN:ZDB-GENE-040718-318
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi33d09; zgc:92735; wu:fi33d09; zgc:110569
Summary: Predicted to be located in cytoplasm; midbody; and nucleus. Orthologous to human ANKRD54 (ankyrin repeat domain 54). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (26035665..26044759)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (25904794..25913888)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in midbody	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ankyrin repeat domain-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002578.1 → NP_001002578.1 ankyrin repeat domain-containing protein 54

See identical proteins and their annotated locations for NP_001002578.1

Status: PROVISIONAL

Source sequence(s)

BC076214

UniProtKB/Swiss-Prot

Q6DGX3

Related

ENSDARP00000072599.4, ENSDART00000078137.5

Conserved Domains (4) summary

cd00204
Location:129 → 237

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:129 → 221

Ank_2; Ankyrin repeats (3 copies)

sd00045
Location:129 → 155

ANK; ANK repeat [structural motif]

cl12013
Location:216 → 291

BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature