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    LOC100996660 uncharacterized LOC100996660 [ Homo sapiens (human) ]

    Gene ID: 100996660, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC100996660
    Gene description
    uncharacterized LOC100996660
    See related
    Ensembl:ENSG00000267248
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100996660 in Genome Data Viewer
    Location:
    17q23.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (60122663..60135644, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (60991618..61004602, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12524 Neighboring gene HEATR6 divergent transcript Neighboring gene WAP four-disulfide core domain 21, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58190476-58191424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58191425-58192371 Neighboring gene adaptor related protein complex 1 subunit sigma 2 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58216417-58216950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58217485-58218018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58218675-58219231 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:58219938-58220447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58232505-58233005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58235149-58235978 Neighboring gene Sharpr-MPRA regulatory region 8996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12527 Neighboring gene family with sequence similarity 106 member D, pseudogene Neighboring gene carbonic anhydrase 4 Neighboring gene ubiquitin specific peptidase 32 Neighboring gene small Cajal body-specific RNA 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187524.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000658811.2

    2. NR_187525.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000668564.1

    3. NR_187526.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000590744.2

    4. NR_187527.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000667343.2

    5. NR_187528.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000688989.1

    6. NR_187529.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000656205.1

    7. NR_187530.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      60122663..60135644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      60991618..61004602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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