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    RAB30-DT RAB30 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100506233, updated on 22-Oct-2024

    Summary

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    Official Symbol
    RAB30-DTprovided by HGNC
    Official Full Name
    RAB30 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:48672
    See related
    Ensembl:ENSG00000246067 AllianceGenome:HGNC:48672
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RAB30-AS1
    Expression
    Ubiquitous expression in fat (RPKM 9.3), testis (RPKM 8.6) and 25 other tissues See more
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    Genomic context

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    See RAB30-DT in Genome Data Viewer
    Location:
    11q14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (83072066..83073712)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (83008524..83010170)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (82783108..82784754)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5337 Neighboring gene ribosomal protein L7a pseudogene 54 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5339 Neighboring gene RAB30, member RAS oncogene family Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5341 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:82756306-82756860 Neighboring gene small nucleolar RNA, H/ACA box 70E Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5342 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5343 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5345 Neighboring gene long intergenic non-protein coding RNA 2951 Neighboring gene cytochrome c oxidase subunit 5B pseudogene 4 Neighboring gene C1D nuclear receptor corepressor pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • RAB30 antisense RNA 1 (head to head)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038903.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI628578, BC031316, BU664621
      Related
      ENST00000752563.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      83072066..83073712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      83008524..83010170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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