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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001142272.2 → NP_001135744.2 rab11 family-interacting protein 3 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AL049542, Z98882
- Related
- ENSP00000415919.1, ENST00000450428.5
- Conserved Domains (2) summary
-
- TIGR02168
Location:160 → 432
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam09457
Location:406 → 446
- RBD-FIP; FIP domain
-
NM_001370401.1 → NP_001357330.1 rab11 family-interacting protein 3 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL023881, AL049542, Z98882
- Consensus CDS
-
CCDS92071.1
- UniProtKB/TrEMBL
- A0A0J9YWV4, X6RFI8
- Related
- ENSP00000399644.2, ENST00000434585.6
- Conserved Domains (4) summary
-
- PRK07764
Location:3 → 223
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- TIGR02168
Location:515 → 787
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam09457
Location:761 → 801
- RBD-FIP; FIP domain
- pfam13499
Location:206 → 264
- EF-hand_7; EF-hand domain pair
-
NM_014700.4 → NP_055515.1 rab11 family-interacting protein 3 isoform 1
See identical proteins and their annotated locations for NP_055515.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AL023881, BC051360, Z98882
- Consensus CDS
-
CCDS32351.1
- UniProtKB/Swiss-Prot
- B0QYI8, B0QYT8, B1AHQ0, B4DEI7, B4DZR6, O75154, Q4VXV7, Q7Z5E9, Q9H155, Q9H1G0, Q9NUI0
- UniProtKB/TrEMBL
- A0A0J9YWV4, X6RFI8
- Related
- ENSP00000262305.4, ENST00000262305.9
- Conserved Domains (8) summary
-
- COG1842
Location:459 → 674
- PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
- pfam09457
Location:716 → 756
- RBD-FIP; FIP domain
- pfam05700
Location:486 → 589
- BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
- pfam11262
Location:540 → 631
- Tho2; Transcription factor/nuclear export subunit protein 2
- pfam13499
Location:207 → 263
- EF-hand_7; EF-hand domain pair
- pfam15068
Location:80 → 140
- FAM101; FAM101 family
- pfam16034
Location:577 → 691
- JAKMIP_CC3; JAKMIP CC3 domain
- cl08302
Location:206 → 264
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
425649..523011
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017023907.2 → XP_016879396.1 rab11 family-interacting protein 3 isoform X1
-
XM_005255717.4 → XP_005255774.1 rab11 family-interacting protein 3 isoform X4
See identical proteins and their annotated locations for XP_005255774.1
- Conserved Domains (3) summary
-
- cd00051
Location:206 → 264
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- pfam13499
Location:207 → 263
- EF-hand_7; EF-hand domain pair
- pfam16214
Location:85 → 220
- AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
-
XM_005255718.4 → XP_005255775.1 rab11 family-interacting protein 3 isoform X6
See identical proteins and their annotated locations for XP_005255775.1
- Conserved Domains (3) summary
-
- cd00051
Location:206 → 264
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- pfam13499
Location:207 → 263
- EF-hand_7; EF-hand domain pair
- pfam16214
Location:85 → 220
- AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
-
XM_047434960.1 → XP_047290916.1 rab11 family-interacting protein 3 isoform X7
-
XM_011522765.3 → XP_011521067.1 rab11 family-interacting protein 3 isoform X5
See identical proteins and their annotated locations for XP_011521067.1
- Conserved Domains (4) summary
-
- COG1842
Location:162 → 377
- PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
- pfam09457
Location:419 → 459
- RBD-FIP; FIP domain
- pfam05700
Location:189 → 292
- BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
- pfam11262
Location:243 → 334
- Tho2; Transcription factor/nuclear export subunit protein 2
-
XM_011522764.3 → XP_011521066.1 rab11 family-interacting protein 3 isoform X3
See identical proteins and their annotated locations for XP_011521066.1
- UniProtKB/Swiss-Prot
-
O75154
- Conserved Domains (2) summary
-
- TIGR02168
Location:205 → 477
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam09457
Location:451 → 491
- RBD-FIP; FIP domain
-
XM_005255715.6 → XP_005255772.1 rab11 family-interacting protein 3 isoform X3
See identical proteins and their annotated locations for XP_005255772.1
- UniProtKB/Swiss-Prot
-
O75154
- Conserved Domains (2) summary
-
- TIGR02168
Location:205 → 477
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam09457
Location:451 → 491
- RBD-FIP; FIP domain
-
XM_047434959.1 → XP_047290915.1 rab11 family-interacting protein 3 isoform X3
-
XM_005255714.2 → XP_005255771.1 rab11 family-interacting protein 3 isoform X2
See identical proteins and their annotated locations for XP_005255771.1
- Conserved Domains (5) summary
-
- COG1842
Location:208 → 423
- PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
- pfam09457
Location:465 → 505
- RBD-FIP; FIP domain
- pfam05700
Location:235 → 338
- BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
- pfam11262
Location:289 → 380
- Tho2; Transcription factor/nuclear export subunit protein 2
- pfam16034
Location:326 → 440
- JAKMIP_CC3; JAKMIP CC3 domain
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NT_187610.1 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
24795..125679
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054329195.1 → XP_054185170.1 rab11 family-interacting protein 3 isoform X4
-
XM_054329196.1 → XP_054185171.1 rab11 family-interacting protein 3 isoform X6
-
XM_054329193.1 → XP_054185168.1 rab11 family-interacting protein 3 isoform X3
-
XM_054329194.1 → XP_054185169.1 rab11 family-interacting protein 3 isoform X3
-
XM_054329192.1 → XP_054185167.1 rab11 family-interacting protein 3 isoform X2
RNA
-
XR_008485623.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
421839..526088
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314494.1 → XP_054170469.1 rab11 family-interacting protein 3 isoform X1
-
XM_054314498.1 → XP_054170473.1 rab11 family-interacting protein 3 isoform X4
-
XM_054314499.1 → XP_054170474.1 rab11 family-interacting protein 3 isoform X6
-
XM_054314496.1 → XP_054170471.1 rab11 family-interacting protein 3 isoform X3
-
XM_054314497.1 → XP_054170472.1 rab11 family-interacting protein 3 isoform X3
-
XM_054314495.1 → XP_054170470.1 rab11 family-interacting protein 3 isoform X2
RNA
-
XR_008484754.1 RNA Sequence