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    TMA16 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 854426, updated on 11-Sep-2024

    Summary

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    Official Symbol
    TMA16
    Primary source
    SGD:S000005778
    Locus tag
    YOR252W
    See related
    AllianceGenome:SGD:S000005778; FungiDB:YOR252W; VEuPathDB:YOR252W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in nucleus. Orthologous to human TMA16 (translation machinery associated 16 homolog). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (803667..804203)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene cleavage polyadenylation factor subunit CLP1 Neighboring gene thiosulfate sulfurtransferase Neighboring gene peptide alpha-N-acetyltransferase subunit NAT5 Neighboring gene protein-transporting protein SEC63

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001147.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The molecular basis for ANE syndrome revealed by the large ribosomal subunit processome interactome. McCann KL, et al. Elife, 2016 Apr 14. PMID 27077951, Free PMC Article
    2. Mutational Analysis of the Nsa2 N-Terminus Reveals Its Essential Role in Ribosomal 60S Subunit Assembly. Paternoga H, et al. Int J Mol Sci, 2020 Nov 30. PMID 33266193, Free PMC Article
    3. Sequential protein association with nascent 60S ribosomal particles. Saveanu C, et al. Mol Cell Biol, 2003 Jul. PMID 12808088, Free PMC Article
    4. A protein interaction map of the LSU processome. McCann KL, et al. Genes Dev, 2015 Apr 15. PMID 25877921, Free PMC Article
    5. Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Fleischer TC, et al. Genes Dev, 2006 May 15. PMID 16702403, Free PMC Article

    See all (35) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Tma16p
    NP_014895.2
    • hypothetical protein that associates with ribosomes

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      803667..804203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001183671.1 → NP_014895.2  TPA: Tma16p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_014895.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6W2V3, Q08687
      UniProtKB/TrEMBL
      B5VSD3, C7GWD7, C8ZH04, G2WNC0, N1P3K1
      Conserved Domains (1) summary
      pfam11176
      Location:23 → 167
      Tma16; Translation machinery-associated protein 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08687.2

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