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    LINC01917 long intergenic non-protein coding RNA 1917 [ Homo sapiens (human) ]

    Gene ID: 101928167, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01917provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1917provided by HGNC
    Primary source
    HGNC:HGNC:52736
    See related
    Ensembl:ENSG00000260433 AllianceGenome:HGNC:52736
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 4.1) See more
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    Genomic context

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    See LINC01917 in Genome Data Viewer
    Location:
    18q21.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (53579623..53581059, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (53782758..53784193, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (51105993..51107429, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene DCC netrin 1 receptor Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:50780507-50781098 Neighboring gene microRNA 4528 Neighboring gene uncharacterized LOC124904305 Neighboring gene uncharacterized LOC124904304 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:51037281-51038480 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:51093005-51093861 Neighboring gene long intergenic non-protein coding RNA 1919 Neighboring gene ribosomal protein L29 pseudogene 32 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:51309208-51310407 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:51377120-51377889 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_48020 Neighboring gene NANOG hESC enhancer GRCh37_chr18:51595986-51596496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13338 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:51650065-51650829 Neighboring gene Sharpr-MPRA regulatory region 14779 Neighboring gene NANOG hESC enhancer GRCh37_chr18:51653946-51654503 Neighboring gene MPRA-validated peak3156 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13341 Neighboring gene small nucleolar RNA, H/ACA box 37 Neighboring gene methyl-CpG binding domain protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110800.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC015524
      Related
      ENST00000565170.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      53579623..53581059 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      53782758..53784193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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