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    tbc1d10aa TBC1 domain family, member 10Aa [ Danio rerio (zebrafish) ]

    Gene ID: 325772, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tbc1d10aaprovided by ZNC
    Official Full Name
    TBC1 domain family, member 10Aaprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4497
    See related
    Ensembl:ENSDARG00000102070 AllianceGenome:ZFIN:ZDB-GENE-030131-4497
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd11a11; wu:fd11a11; si:ch211-87l2.1
    Summary
    Predicted to enable GTPase activator activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; otic vesicle; pectoral fin; and ventral mesoderm. Orthologous to human TBC1D10A (TBC1 domain family member 10A). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See tbc1d10aa in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (40426766..40452016, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (40387181..40412467, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene ORAI calcium release-activated calcium modulator 1a Neighboring gene apelin receptor a Neighboring gene myosin, light chain 7, regulatory Neighboring gene glucokinase (hexokinase 4)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Embryonic expression patterns of TBC1D10 subfamily genes in zebrafish. Sun S, et al. Gene Expr Patterns, 2022 Mar. PMID 34843939
    2. Characterization of the Apelin/Elabela Receptors (APLNR) in Chickens, Turtles, and Zebrafish: Identification of a Novel Apelin-Specific Receptor in Teleosts. Zhang J, et al. Front Endocrinol (Lausanne), 2018. PMID 30631305, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    TBC1 domain family member 10A; TBC1 domain family, member 10Aa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      40426766..40452016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304172.3 → XP_009302447.1  TBC1 domain family member 10A

      UniProtKB/TrEMBL
      A0A8M3BBZ7
      Related
      ENSDARP00000131583.1, ENSDART00000157698.2
      Conserved Domains (1) summary
      pfam00566
      Location:142 → 305
      RabGAP-TBC; Rab-GTPase-TBC domain
    Nucleotide Protein Strain
    Heading Accession and Version

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