elob elongin B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: elobprovided by ZNC
Official Full Name: elongin Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-020415-1
See related: Ensembl:ENSDARG00000037980 AllianceGenome:ZFIN:ZDB-GENE-020415-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb162; tceb2; wu:fb47e08
Summary: Predicted to act upstream of or within transcription elongation by RNA polymerase II. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (31069268..31079245, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (30938426..30948403, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fk35c05.y1 (e-PCR)
- UniSTS:200887

fb47e08.x1 (e-PCR)
- UniSTS:203222

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within transcription elongation by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of VCB complex	IEA Inferred from Electronic Annotation more info
part_of elongin complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: elongin-B

Names: transcription elongation factor B (SIII), polypeptide 2 (18kD, elongin B)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001142954.1 → NP_001136426.1 elongin-B

Status: VALIDATED

Source sequence(s)

BX004999

UniProtKB/TrEMBL

A0A8M1NSZ1, F1QF30

Related

ENSDARP00000114273.1, ENSDART00000140569.3

Conserved Domains (1) summary

cd01788
Location:2 → 103

Ubl_ElonginB; ubiquitin-like (Ubl) domain found in transcription elongation factor B (Elongin B) and similar proteins