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    nol11 nucleolar protein 11 [ Danio rerio (zebrafish) ]

    Gene ID: 321700, updated on 2-Nov-2024

    Summary

    Official Symbol
    nol11provided by ZNC
    Official Full Name
    nucleolar protein 11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-419
    See related
    Ensembl:ENSDARG00000026767 AllianceGenome:ZFIN:ZDB-GENE-030131-419
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa11h01; wu:fa11h01; wu:fb30e03; zgc:109901
    Summary
    Predicted to be involved in maturation of SSU-rRNA and positive regulation of transcription of nucleolar large rRNA by RNA polymerase I. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human NOL11 (nucleolar protein 11). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See nol11 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (22958385..23001861, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (17860466..17903942, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharcterized LOC100321644 Neighboring gene uncharacterized LOC137495966 Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene polymerase (DNA directed), gamma 2, accessory subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC109901

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within maturation of SSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in maturation of SSU-rRNA ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of transcription of nucleolar large rRNA by RNA polymerase I ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030063.1NP_001025234.1  nucleolar protein 11-like

      See identical proteins and their annotated locations for NP_001025234.1

      Status: PROVISIONAL

      Source sequence(s)
      BC096784
      UniProtKB/Swiss-Prot
      Q4V9P9
      Related
      ENSDARP00000032159.5, ENSDART00000037709.8

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      22958385..23001861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)