sgo2 shugoshin 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sgo2provided by ZNC
Official Full Name: shugoshin 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-081104-423
See related: Ensembl:ENSDARG00000092651 AllianceGenome:ZFIN:ZDB-GENE-081104-423
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-57a22.11
Summary: Predicted to be involved in meiotic sister chromatid cohesion. Predicted to act upstream of or within cell division and meiotic chromosome segregation. Predicted to be located in chromosome, centromeric region and nucleus. Predicted to be active in kinetochore. Orthologous to human SGO2 (shugoshin 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 9

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (21977383..21983659)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (22166514..22175282)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell division	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within chromosome segregation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within meiotic chromosome segregation	IEA Inferred from Electronic Annotation more info
involved_in meiotic sister chromatid cohesion	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in chromosome	IEA Inferred from Electronic Annotation more info
located_in chromosome, centromeric region	IEA Inferred from Electronic Annotation more info
is_active_in kinetochore	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC569865

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123299.1 → NP_001116771.1 uncharacterized protein LOC569865

Status: PREDICTED

Source sequence(s)

CR536604

UniProtKB/TrEMBL

A0A8M1NIL6, B0UYN0

Related

ENSDARP00000117553.1, ENSDART00000135032.2

Conserved Domains (1) summary

pfam07557
Location:797 → 820

Shugoshin_C; Shugoshin C terminus