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    fam78ba family with sequence similarity 78 member Ba [ Danio rerio (zebrafish) ]

    Gene ID: 100004809, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fam78baprovided by ZNC
    Official Full Name
    family with sequence similarity 78 member Baprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140227-3
    See related
    Ensembl:ENSDARG00000063018 AllianceGenome:ZFIN:ZDB-GENE-140227-3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:zfos-1453d3.1
    Summary
    Is expressed in heart. Orthologous to human FAM78B (family with sequence similarity 78 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See fam78ba in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (10055752..10061668, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (10258063..10264723, complement)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene SEC22 homolog B, vesicle trafficking protein a Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3 Neighboring gene solute carrier family 35 member A3b Neighboring gene cytidylate kinase Neighboring gene BCL6A transcription repressor b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. Ding Y, et al. Circ Res, 2013 Feb 15. PMID 23283723, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein FAM78B
    Names
    family with sequence similarity 78, member B a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      10055752..10061668 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001338205.8 → XP_001338241.2  protein FAM78B

      UniProtKB/TrEMBL
      A0A8M1PUM7, E7EZK7
      Related
      ENSDARP00000086159.4, ENSDART00000091726.6
    Nucleotide Protein
    Heading Accession and Version

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