U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    susd6 sushi domain containing 6 [ Danio rerio (zebrafish) ]

    Gene ID: 336888, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    susd6provided by ZNC
    Official Full Name
    sushi domain containing 6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8832
    See related
    Ensembl:ENSDARG00000030116 AllianceGenome:ZFIN:ZDB-GENE-030131-8832
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fk24g06; wu:fk24g06; zgc:154022; si:dkey-11e23.5
    Summary
    Predicted to be involved in DNA damage response. Predicted to be located in membrane. Orthologous to human SUSD6 (sushi domain containing 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See susd6 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (28885990..28931940, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (28983111..29029069, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 10 member 1 Neighboring gene serine and arginine rich splicing factor 5b Neighboring gene acyl-CoA thioesterase 20 Neighboring gene acyl-CoA thioesterase 21

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. Quach HN, et al. G3 (Bethesda), 2015 Apr 2. PMID 25840430, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC154022

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA damage response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    sushi domain-containing protein 6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044755.1 → NP_001038220.1  sushi domain-containing protein 6 precursor

      Status: PROVISIONAL

      Source sequence(s)
      AL928866
      UniProtKB/TrEMBL
      A0A8M1N915, U3JAN2
      Related
      ENSDARP00000127300.1, ENSDART00000153082.2
      Conserved Domains (1) summary
      cd00033
      Location:38 → 97
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      28885990..28931940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215389.1 → XP_068071490.1  sushi domain-containing protein 6 isoform X3

      Related
      ENSDARP00000046041.6, ENSDART00000046042.8

    2. XM_005160642.4 → XP_005160699.1  sushi domain-containing protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B7I4
      Conserved Domains (1) summary
      cd00033
      Location:38 → 97
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    3. XM_005160641.5 → XP_005160698.1  sushi domain-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B7I3
      Conserved Domains (1) summary
      cd00033
      Location:38 → 97
      CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

    RNA

    1. XR_011007672.1 RNA Sequence

    2. XR_011007671.1 RNA Sequence

    3. XR_011007670.1 RNA Sequence

    4. XR_011007669.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools