pabpn1l PABPN1 like, cytoplasmic [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pabpn1lprovided by ZNC
Official Full Name: PABPN1 like, cytoplasmicprovided by ZNC
Primary source: ZFIN:ZDB-GENE-080709-5
See related: Ensembl:ENSDARG00000087996 AllianceGenome:ZFIN:ZDB-GENE-080709-5
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable poly(A) binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be active in nucleus. Orthologous to human PABPN1L (PABPN1 like, cytoplasmic). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (55637370..55648476, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (55335959..55347065, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: embryonic polyadenylate-binding protein 2

Names: poly(A) binding protein, nuclear 1-like (cytoplasmic); polyadenylate-binding protein 2-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001327845.1 → NP_001314774.1 embryonic polyadenylate-binding protein 2

Status: VALIDATED

Source sequence(s)

EH537474, EH553966

UniProtKB/TrEMBL

A0A8M1P8D1, E7EZ26

Related

ENSDARP00000118258.1, ENSDART00000131923.3

Conserved Domains (2) summary

COG0724
Location:1 → 113

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cl17169
Location:38 → 113

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

55637370..55648476 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021477616.2 → XP_021333291.1 embryonic polyadenylate-binding protein 2 isoform X1

UniProtKB/TrEMBL

A0A8M9QC75

Conserved Domains (1) summary

cl17169
Location:38 → 113

RRM_SF; RNA recognition motif (RRM) superfamily