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    c18h3orf33 c18h3orf33 homolog (H. sapiens) [ Danio rerio (zebrafish) ]

    Gene ID: 565816, updated on 2-Nov-2024

    Summary

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    Official Symbol
    c18h3orf33provided by ZNC
    Official Full Name
    c18h3orf33 homolog (H. sapiens)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061121-2
    See related
    Ensembl:ENSDARG00000040582 AllianceGenome:ZFIN:ZDB-GENE-061121-2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    c3orf33; c6orf33
    Summary
    Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human C3orf33 (chromosome 3 open reading frame 33). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See c18h3orf33 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (34146007..34156765, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (34169983..34180741, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor C family, r1 Neighboring gene phospholipase C, eta 1 Neighboring gene solute carrier family 33 member 1 Neighboring gene guanine monophosphate synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. Hashiguchi Y, et al. BMC Evol Biol, 2006 Oct 3. PMID 17014738, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein C3orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001144796.1 → NP_001138268.1  protein C3orf33 homolog

      Status: PROVISIONAL

      Source sequence(s)
      CU570794
      UniProtKB/TrEMBL
      A0A8M1NR34, B8JLW4
      Related
      ENSDARP00000059399.6, ENSDART00000059400.7
      Conserved Domains (1) summary
      cl00140
      Location:167 → 216
      SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      34146007..34156765 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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