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    psmd12 proteasome 26S subunit, non-ATPase 12 [ Danio rerio (zebrafish) ]

    Gene ID: 321898, updated on 2-Nov-2024

    Summary

    Official Symbol
    psmd12provided by ZNC
    Official Full Name
    proteasome 26S subunit, non-ATPase 12provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-617
    See related
    Ensembl:ENSDARG00000052377 AllianceGenome:ZFIN:ZDB-GENE-030131-617
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc34f08; wu:fb38a06; wu:fc34f08; wu:fc49f02
    Summary
    Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See psmd12 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (21526346..21534233, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (19466124..19474011, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, gamma subunit 1a Neighboring gene calcium channel, voltage-dependent, gamma subunit 4a Neighboring gene MICAL-like 1a Neighboring gene si:dkey-43k4.3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of proteasome regulatory particle, lid subcomplex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    26S proteasome non-ATPase regulatory subunit 12
    Names
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 12

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201578.1NP_963872.1  26S proteasome non-ATPase regulatory subunit 12

      See identical proteins and their annotated locations for NP_963872.1

      Status: PROVISIONAL

      Source sequence(s)
      BC042325
      UniProtKB/TrEMBL
      A0A8N7XJF9, B2GT23, E7FB49, Q8AW07
      Related
      ENSDARP00000106592.3, ENSDART00000126186.4
      Conserved Domains (1) summary
      COG5071
      Location:14456
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      21526346..21534233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)