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    si:rp71-77l1.1 si:rp71-77l1.1 [ Danio rerio (zebrafish) ]

    Gene ID: 569583, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:rp71-77l1.1provided by ZNC
    Official Full Name
    si:rp71-77l1.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-141
    See related
    Ensembl:ENSDARG00000097746 AllianceGenome:ZFIN:ZDB-GENE-131121-141
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be active in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See si:rp71-77l1.1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (45087970..45094600, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (45121254..45131448, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase, spermatogenic Neighboring gene si:rp71-77l1.2 Neighboring gene uncharacterized LOC137487974 Neighboring gene uncharacterized LOC100149761 Neighboring gene si:ch73-343g19.4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dispanin subfamily A member 2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      45087970..45094600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009292631.4 → XP_009290906.1  dispanin subfamily A member 2b

      UniProtKB/TrEMBL
      A0A8M3B1Z7, X1WG92
      Related
      ENSDARP00000129247.1, ENSDART00000155479.2
      Conserved Domains (1) summary
      pfam04505
      Location:62 → 127
      CD225; Interferon-induced transmembrane protein
    Nucleotide Protein
    Heading Accession and Version

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