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    cidec cell death inducing DFFA like effector c [ Danio rerio (zebrafish) ]

    Gene ID: 564304, updated on 9-Dec-2024

    Summary

    Official Symbol
    cidecprovided by ZNC
    Official Full Name
    cell death inducing DFFA like effector cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4591
    See related
    Ensembl:ENSDARG00000059651 AllianceGenome:ZFIN:ZDB-GENE-030131-4591
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd36c01; wu:fd36c01; zgc:153033; si:dkey-91f15.6
    Summary
    Predicted to be involved in regulation of apoptotic process. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 5. Orthologous to human CIDEC (cell death inducing DFFA like effector c). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See cidec in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (21202668..21212087)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (19142446..19151865)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene striated muscle enriched protein kinase a Neighboring gene obscurin like cytoskeletal adaptor 1a Neighboring gene protein kinase C, alpha, a Neighboring gene calcium channel, voltage-dependent, gamma subunit 5a Neighboring gene uncharacterized LOC137495960

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    cell death activator CIDE-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045047.1NP_001038512.1  cell death activator CIDE-3

      See identical proteins and their annotated locations for NP_001038512.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122122
      UniProtKB/TrEMBL
      B2GRD1, Q0P4E5
      Related
      ENSDARP00000077561.5, ENSDART00000083126.6
      Conserved Domains (1) summary
      cd06538
      Location:36114
      CIDE_N_FSP27; CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      21202668..21212087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394633.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      439266..448685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)