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    si:dkey-35i13.1 si:dkey-35i13.1 [ Danio rerio (zebrafish) ]

    Gene ID: 795516, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-35i13.1provided by ZNC
    Official Full Name
    si:dkey-35i13.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8008
    See related
    Ensembl:ENSDARG00000097648 AllianceGenome:ZFIN:ZDB-GENE-030131-8008
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj46d11; wu:fj46d11
    Summary
    Predicted to be located in membrane. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to human C11orf87 (chromosome 11 open reading frame 87). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-35i13.1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (4632906..4635316)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (4641569..4644672)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103908797 Neighboring gene ring finger and FYVE-like domain containing E3 ubiquitin protein ligase Neighboring gene eukaryotic translation initiation factor 4h Neighboring gene uncharacterized LOC137487715 Neighboring gene lipoyl(octanoyl) transferase 2 Neighboring gene ring finger protein 169

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. Takeuchi M, et al. J Comp Neurol, 2017 May 1. PMID 27615194
    2. Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Thyme SB, et al. Cell, 2019 Apr 4. PMID 30929901, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      4632906..4635316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_011006396.1 RNA Sequence

      Related
      ENSDART00000156012.2
    Nucleotide Protein
    Heading Accession and Version

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