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    psd3l pleckstrin and Sec7 domain containing 3, like [ Danio rerio (zebrafish) ]

    Gene ID: 559329, updated on 2-Nov-2024

    Summary

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    Official Symbol
    psd3lprovided by ZNC
    Official Full Name
    pleckstrin and Sec7 domain containing 3, likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8195
    See related
    Ensembl:ENSDARG00000104820 AllianceGenome:ZFIN:ZDB-GENE-030131-8195
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj59e03; wu:fj59e03
    Summary
    Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See psd3l in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (6997231..7232268)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (7038678..7275255)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 9 Neighboring gene SH2 domain containing 4A Neighboring gene fucosyltransferase 10 Neighboring gene neuregulin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis. Toro S, et al. Gene Expr Patterns, 2009 Apr. PMID 19166982, Free PMC Article
    2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of ARF protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in ruffle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PH and SEC7 domain-containing protein 1; PH and SEC7 domain-containing protein 3; pleckstrin and Sec7 domain containing 3, like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      6997231..7232268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223894.1 → XP_068079995.1  PH and SEC7 domain-containing protein 1 isoform X1

    2. XM_068223895.1 → XP_068079996.1  PH and SEC7 domain-containing protein 1 isoform X2

      Related
      ENSDARP00000130428.2, ENSDART00000166206.2

    3. XM_068223896.1 → XP_068079997.1  PH and SEC7 domain-containing protein 3 isoform X3

    4. XM_068223898.1 → XP_068079999.1  PH and SEC7 domain-containing protein 3 isoform X4

    5. XM_068223897.1 → XP_068079998.1  PH and SEC7 domain-containing protein 3 isoform X4

    6. XM_068223899.1 → XP_068080000.1  PH and SEC7 domain-containing protein 3 isoform X5

      Related
      ENSDARP00000154205.1, ENSDART00000186788.1
    Nucleotide Protein Strain
    Heading Accession and Version

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