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    tada1 transcriptional adaptor 1 [ Danio rerio (zebrafish) ]

    Gene ID: 402899, updated on 2-Nov-2024

    Summary

    Official Symbol
    tada1provided by ZNC
    Official Full Name
    transcriptional adaptor 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-58
    See related
    AllianceGenome:ZFIN:ZDB-GENE-040426-58
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    STAF42; tada1l; zgc:85851
    Summary
    Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of SAGA complex. Orthologous to human TADA1 (transcriptional adaptor 1). [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
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    Genomic context

    See tada1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (104972..109360)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (117358..120297)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 1 Neighboring gene angiopoietin-like 1b Neighboring gene FGGY carbohydrate kinase domain containing Neighboring gene zinc finger-like gene 2a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of SAGA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of SAGA-type complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    transcriptional adapter 1
    Names
    SPT3-associated factor 42
    transcriptional adapter 1-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205606.2NP_991169.1  transcriptional adapter 1

      See identical proteins and their annotated locations for NP_991169.1

      Status: VALIDATED

      Source sequence(s)
      BC153454, CABZ01098670, CABZ01111422, CABZ01114054
      UniProtKB/Swiss-Prot
      Q6NWA8
      Conserved Domains (1) summary
      pfam12767
      Location:7193
      SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      104972..109360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)