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    troap trophinin associated protein [ Danio rerio (zebrafish) ]

    Gene ID: 795944, updated on 2-Nov-2024

    Summary

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    Official Symbol
    troapprovided by ZNC
    Official Full Name
    trophinin associated proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1968
    See related
    Ensembl:ENSDARG00000094977 AllianceGenome:ZFIN:ZDB-GENE-030131-1968
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb93c06; id:ibd3333; wu:fb93c06; wu:fl69f07; si:ch211-156j22.4
    Summary
    Is expressed in neural plate. Orthologous to human TROAP (trophinin associated protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See troap in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (27575540..27589812, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (27648997..27663307, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein 4Aa Neighboring gene phosphofructokinase, muscle a Neighboring gene PHD finger protein 8 Neighboring gene ADP-ribosylation factor 3a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    trophinin associated protein; uncharacterized protein troap
    Names
    proteophosphoglycan 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      27575540..27589812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009296952.4 → XP_009295227.1  uncharacterized protein troap isoform X2

      UniProtKB/TrEMBL
      A0A8M3AN25

    2. XM_001334580.8 → XP_001334616.2  uncharacterized protein troap isoform X1

      UniProtKB/TrEMBL
      A0A8M1PUC1, E9QC53
      Related
      ENSDARP00000114107.1, ENSDART00000133721.3
    Nucleotide Protein Strain
    Heading Accession and Version

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