si:dkey-222f8.3 si:dkey-222f8.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-222f8.3provided by ZNC
Official Full Name: si:dkey-222f8.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3658
See related: Ensembl:ENSDARG00000058366 AllianceGenome:ZFIN:ZDB-GENE-030131-3658
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: braf; fc48g01; wu:fc48g01
Summary: Predicted to enable RNA endonuclease activity. Is expressed in several structures, including EVL; mucus secreting cell; nervous system; periderm; and vasculature. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:dkey-222f8.3 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (12033873..12040345, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (12035024..12041496, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA endonuclease activity	IBA Inferred from Biological aspect of Ancestor more info
enables RNA endonuclease activity	IEA Inferred from Electronic Annotation more info
enables endonuclease activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nuclease activity	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Poly(U)-specific endoribonuclease-C-like

Names: v-raf murine sarcoma viral oncogene homolog B1

NP_001038432.1

EC 4.6.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.