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    spon2a spondin 2a, extracellular matrix protein [ Danio rerio (zebrafish) ]

    Gene ID: 30201, updated on 2-Nov-2024

    Summary

    Official Symbol
    spon2aprovided by ZNC
    Official Full Name
    spondin 2a, extracellular matrix proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-990415-160
    See related
    Ensembl:ENSDARG00000025465 AllianceGenome:ZFIN:ZDB-GENE-990415-160
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    mindin1
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Located in extracellular matrix. Is expressed in axial mesoderm; central nervous system; hypochord; notochord; and presumptive hypochord. Orthologous to human SPON2 (spondin 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See spon2a in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (21861099..21900471)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (21563854..21603226)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 13 family, member D Neighboring gene C-terminal binding protein 1 Neighboring gene TBC1 domain family, member 10C Neighboring gene RAD9 checkpoint clamp component A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular matrix IDA
    Inferred from Direct Assay
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    spondin-2a
    Names
    etID309957.14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131007.1NP_571082.1  spondin-2a precursor

      See identical proteins and their annotated locations for NP_571082.1

      Status: PROVISIONAL

      Source sequence(s)
      AB006084
      UniProtKB/TrEMBL
      A0A8M1PAC8, O42111
      Related
      ENSDARP00000037261.7, ENSDART00000032141.9
      Conserved Domains (2) summary
      smart00209
      Location:283330
      TSP1; Thrombospondin type 1 repeats
      pfam06468
      Location:44230
      Spond_N; Spondin_N

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      21861099..21900471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394904.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      66100..106083
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)