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    MANEA-DT MANEA divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101927288, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MANEA-DTprovided by HGNC
    Official Full Name
    MANEA divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:43732
    See related
    Ensembl:ENSG00000261366 AllianceGenome:HGNC:43732
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MANEA-AS1
    Expression
    Ubiquitous expression in fat (RPKM 1.6), testis (RPKM 1.5) and 24 other tissues See more
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    Genomic context

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    See MANEA-DT in Genome Data Viewer
    Location:
    6q16.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (95560096..95577451, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (96731046..96748401, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (96007972..96025327, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377901 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:95263598-95264402 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:95266514-95267437 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:95268361-95269283 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:95269284-95270205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24838 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:95534248-95534846 Neighboring gene Sharpr-MPRA regulatory region 1325 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:95583098-95583762 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:95583763-95584426 Neighboring gene NANOG hESC enhancer GRCh37_chr6:95865708-95866213 Neighboring gene MPRA-validated peak5964 silencer Neighboring gene MPRA-validated peak5965 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:95996896-95997512 Neighboring gene Sharpr-MPRA regulatory region 13210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17405 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:96025507-96026447 Neighboring gene CYCS pseudogene 17 Neighboring gene MPRA-validated peak5967 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:96083096-96083596 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:96083597-96084097 Neighboring gene uncharacterized LOC107986543 Neighboring gene mannosidase endo-alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • MANEA antisense RNA 1 (head to head)
    • MANEA antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047502.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL671884
      Related
      ENST00000564541.1

    2. NR_104136.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks the 3' segment and contains two alternate 3' exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL671884

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      95560096..95577451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      96731046..96748401 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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