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    LAMA4-AS1 LAMA4 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101927640, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LAMA4-AS1provided by HGNC
    Official Full Name
    LAMA4 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40333
    See related
    AllianceGenome:HGNC:40333
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.6) See more
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    Genomic context

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    See LAMA4-AS1 in Genome Data Viewer
    Location:
    6q21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (112236596..112306683)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (113419987..113490132)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (112557797..112627885)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986633 Neighboring gene laminin subunit alpha 4 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:112462018-112463217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24961 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112519925-112520428 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112520429-112520931 Neighboring gene RNA, U6 small nuclear 1226, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:112524438-112525637 Neighboring gene NANOG hESC enhancer GRCh37_chr6:112535822-112536323 Neighboring gene uncharacterized LOC107986632 Neighboring gene PIN2 (TERF1) interacting telomerase inhibitor 1 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:112649857-112650442 Neighboring gene ret finger protein like 4B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121193.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA912996, AI148060

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      112236596..112306683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      113419987..113490132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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