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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001289984.2 → NP_001276913.1 E3 ubiquitin-protein ligase Jade-2 isoform 1
See identical proteins and their annotated locations for NP_001276913.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
- Source sequence(s)
-
BC021962, BN000288, DB451538
- Consensus CDS
-
CCDS75305.1
- UniProtKB/TrEMBL
- A0A0C4DFT8, A8K356, A8K9C0
- Related
- ENSP00000354425.2, ENST00000361895.6
- Conserved Domains (3) summary
-
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- cl26386
Location:582 → 786
- DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
- cl26518
Location:137 → 531
- EPL1; Enhancer of polycomb-like
-
NM_001289985.2 → NP_001276914.1 E3 ubiquitin-protein ligase Jade-2 isoform 2
See identical proteins and their annotated locations for NP_001276914.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in 5' terminal exon that results in translation initiation at an alternate start codon, and it also contains an additional in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AK056471, BN000288
- UniProtKB/TrEMBL
- B3KPL2, B4DFY8
- Conserved Domains (3) summary
-
- cd15680
Location:217 → 262
- PHD_JADE2; PHD finger found in protein Jade-2 and similar proteins
- cd15705
Location:270 → 380
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:153 → 191
- EPL1; Enhancer of polycomb-like
-
NM_001308143.2 → NP_001295072.1 E3 ubiquitin-protein ligase Jade-2 isoform 4
See identical proteins and their annotated locations for NP_001295072.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and contains an additional in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (4) is longer than isoform 1.
- Source sequence(s)
-
AA781608, AC005355, AK294327, BN000288, KF510885
- Consensus CDS
-
CCDS78061.1
- UniProtKB/TrEMBL
- B4DFY8, D6R9B8, G3XAA4
- Conserved Domains (4) summary
-
- COG5141
Location:137 → 506
- COG5141; PHD zinc finger-containing protein [General function prediction only]
- PRK07764
Location:625 → 829
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:10 → 175
- EPL1; Enhancer of polycomb-like
-
NM_001388185.1 → NP_001375114.1 E3 ubiquitin-protein ligase Jade-2 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC005355, AC106763
- Consensus CDS
-
CCDS78061.1
- UniProtKB/TrEMBL
- B4DFY8, D6R9B8, G3XAA4
- Related
- ENSP00000505514.1, ENST00000681547.2
- Conserved Domains (4) summary
-
- COG5141
Location:137 → 506
- COG5141; PHD zinc finger-containing protein [General function prediction only]
- PRK07764
Location:625 → 829
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:10 → 175
- EPL1; Enhancer of polycomb-like
-
NM_001388186.1 → NP_001375115.1 E3 ubiquitin-protein ligase Jade-2 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC005355, AC106763
- Consensus CDS
-
CCDS78061.1
- UniProtKB/TrEMBL
- B4DFY8, D6R9B8, G3XAA4
- Related
- ENSP00000422991.2, ENST00000512386.6
- Conserved Domains (4) summary
-
- COG5141
Location:137 → 506
- COG5141; PHD zinc finger-containing protein [General function prediction only]
- PRK07764
Location:625 → 829
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:10 → 175
- EPL1; Enhancer of polycomb-like
-
NM_001388187.1 → NP_001375116.1 E3 ubiquitin-protein ligase Jade-2 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC005355, AC106763
- Consensus CDS
-
CCDS78061.1
- UniProtKB/TrEMBL
- B4DFY8, D6R9B8, G3XAA4
- Conserved Domains (4) summary
-
- COG5141
Location:137 → 506
- COG5141; PHD zinc finger-containing protein [General function prediction only]
- PRK07764
Location:625 → 829
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:10 → 175
- EPL1; Enhancer of polycomb-like
-
NM_001388188.1 → NP_001375117.1 E3 ubiquitin-protein ligase Jade-2 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC005355, AC106763, KF510885
- Consensus CDS
-
CCDS93782.1
- UniProtKB/TrEMBL
- A0A087X085, B4DFY8
- Conserved Domains (4) summary
-
- COG5141
Location:137 → 506
- COG5141; PHD zinc finger-containing protein [General function prediction only]
- PRK07764
Location:624 → 828
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:10 → 175
- EPL1; Enhancer of polycomb-like
-
NM_015288.6 → NP_056103.4 E3 ubiquitin-protein ligase Jade-2 isoform 3
See identical proteins and their annotated locations for NP_056103.4
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
BN000288
- Consensus CDS
-
CCDS4176.1
- UniProtKB/Swiss-Prot
- D3DQA3, Q6IE80, Q8TEK0, Q92513, Q96GQ6, Q9NQC1
- UniProtKB/TrEMBL
-
A8K356
- Related
- ENSP00000378451.1, ENST00000395003.5
- Conserved Domains (4) summary
-
- COG5141
Location:137 → 530
- COG5141; PHD zinc finger-containing protein [General function prediction only]
- cd15680
Location:201 → 246
- PHD_JADE2; PHD finger found in protein Jade-2 and similar proteins
- cd15705
Location:254 → 364
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- pfam10513
Location:137 → 175
- EPL1; Enhancer of polycomb-like
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
134523952..134583227
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047417024.1 → XP_047272980.1 E3 ubiquitin-protein ligase Jade-2 isoform X1
- UniProtKB/TrEMBL
- D6R9B8, G3XAA4
-
XM_011543291.4 → XP_011541593.2 E3 ubiquitin-protein ligase Jade-2 isoform X2
-
XM_047417025.1 → XP_047272981.1 E3 ubiquitin-protein ligase Jade-2 isoform X3
-
XM_047417036.1 → XP_047272992.1 E3 ubiquitin-protein ligase Jade-2 isoform X12
- UniProtKB/TrEMBL
-
A0A0C4DFT8
-
XM_047417038.1 → XP_047272994.1 E3 ubiquitin-protein ligase Jade-2 isoform X13
- UniProtKB/Swiss-Prot
- D3DQA3, Q6IE80, Q8TEK0, Q92513, Q96GQ6, Q9NQC1
-
XM_047417028.1 → XP_047272984.1 E3 ubiquitin-protein ligase Jade-2 isoform X5
-
XM_047417032.1 → XP_047272988.1 E3 ubiquitin-protein ligase Jade-2 isoform X9
-
XM_047417034.1 → XP_047272990.1 E3 ubiquitin-protein ligase Jade-2 isoform X11
-
XM_047417030.1 → XP_047272986.1 E3 ubiquitin-protein ligase Jade-2 isoform X7
- UniProtKB/TrEMBL
-
A0A087X085
- Related
- ENSP00000483173.2, ENST00000612830.2
-
XM_047417035.1 → XP_047272991.1 E3 ubiquitin-protein ligase Jade-2 isoform X12
- UniProtKB/TrEMBL
-
A0A0C4DFT8
-
XM_047417031.1 → XP_047272987.1 E3 ubiquitin-protein ligase Jade-2 isoform X7
- UniProtKB/TrEMBL
-
A0A087X085
-
XM_047417037.1 → XP_047272993.1 E3 ubiquitin-protein ligase Jade-2 isoform X12
- UniProtKB/TrEMBL
-
A0A0C4DFT8
-
XM_047417039.1 → XP_047272995.1 E3 ubiquitin-protein ligase Jade-2 isoform X13
- UniProtKB/Swiss-Prot
- D3DQA3, Q6IE80, Q8TEK0, Q92513, Q96GQ6, Q9NQC1
-
XM_047417026.1 → XP_047272982.1 E3 ubiquitin-protein ligase Jade-2 isoform X4
-
XM_047417029.1 → XP_047272985.1 E3 ubiquitin-protein ligase Jade-2 isoform X6
-
XM_047417033.1 → XP_047272989.1 E3 ubiquitin-protein ligase Jade-2 isoform X10
-
XM_024446007.2 → XP_024301775.1 E3 ubiquitin-protein ligase Jade-2 isoform X8
- UniProtKB/TrEMBL
-
B4DFY8
- Conserved Domains (3) summary
-
- cd15705
Location:248 → 358
- ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
- cl26386
Location:619 → 823
- DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
- cl26518
Location:131 → 500
- EPL1; Enhancer of polycomb-like
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
135049572..135108849
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054352219.1 → XP_054208194.1 E3 ubiquitin-protein ligase Jade-2 isoform X1
- UniProtKB/TrEMBL
- D6R9B8, G3XAA4
-
XM_054352220.1 → XP_054208195.1 E3 ubiquitin-protein ligase Jade-2 isoform X2
-
XM_054352221.1 → XP_054208196.1 E3 ubiquitin-protein ligase Jade-2 isoform X3
-
XM_054352232.1 → XP_054208207.1 E3 ubiquitin-protein ligase Jade-2 isoform X12
- UniProtKB/TrEMBL
-
A0A0C4DFT8
-
XM_054352234.1 → XP_054208209.1 E3 ubiquitin-protein ligase Jade-2 isoform X13
- UniProtKB/Swiss-Prot
- D3DQA3, Q6IE80, Q8TEK0, Q92513, Q96GQ6, Q9NQC1
-
XM_054352223.1 → XP_054208198.1 E3 ubiquitin-protein ligase Jade-2 isoform X5
-
XM_054352228.1 → XP_054208203.1 E3 ubiquitin-protein ligase Jade-2 isoform X9
-
XM_054352230.1 → XP_054208205.1 E3 ubiquitin-protein ligase Jade-2 isoform X11
-
XM_054352225.1 → XP_054208200.1 E3 ubiquitin-protein ligase Jade-2 isoform X7
- UniProtKB/TrEMBL
-
A0A087X085
-
XM_054352231.1 → XP_054208206.1 E3 ubiquitin-protein ligase Jade-2 isoform X12
- UniProtKB/TrEMBL
-
A0A0C4DFT8
-
XM_054352226.1 → XP_054208201.1 E3 ubiquitin-protein ligase Jade-2 isoform X7
- UniProtKB/TrEMBL
-
A0A087X085
-
XM_054352233.1 → XP_054208208.1 E3 ubiquitin-protein ligase Jade-2 isoform X12
- UniProtKB/TrEMBL
-
A0A0C4DFT8
-
XM_054352235.1 → XP_054208210.1 E3 ubiquitin-protein ligase Jade-2 isoform X13
- UniProtKB/Swiss-Prot
- D3DQA3, Q6IE80, Q8TEK0, Q92513, Q96GQ6, Q9NQC1
-
XM_054352222.1 → XP_054208197.1 E3 ubiquitin-protein ligase Jade-2 isoform X4
-
XM_054352224.1 → XP_054208199.1 E3 ubiquitin-protein ligase Jade-2 isoform X6
-
XM_054352229.1 → XP_054208204.1 E3 ubiquitin-protein ligase Jade-2 isoform X10
-
XM_054352227.1 → XP_054208202.1 E3 ubiquitin-protein ligase Jade-2 isoform X8