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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_023373.1 RefSeqGene
- Range
-
4824..162116
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001001924.3 → NP_001001924.1 microtubule-associated tumor suppressor 1 isoform 1
See identical proteins and their annotated locations for NP_001001924.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), also known as ATIP3, encodes the longest isoform (1).
- Source sequence(s)
-
AB033114, AF121259, AK310871, AL096842, BC142971, DA339588, DB221458
- Consensus CDS
-
CCDS43717.1
- UniProtKB/Swiss-Prot
- A8K135, B2RBJ6, B3KWJ9, B4DH03, B9EGA1, D3DSP8, Q63HJ6, Q659F4, Q6PK49, Q6URW7, Q8N4M6, Q8WTT9, Q9H7T2, Q9ULD2
- Related
- ENSP00000262102.6, ENST00000262102.10
- Conserved Domains (1) summary
-
- cl25732
Location:919 → 1215
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001001925.3 → NP_001001925.1 microtubule-associated tumor suppressor 1 isoform 2
See identical proteins and their annotated locations for NP_001001925.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. It encodes isoform 2 which lacks an internal segment, compared to isoform 1.
- Source sequence(s)
-
AB033114, AF121259, AK310871, AL096842, BC142971, DA339588, DB221458
- Consensus CDS
-
CCDS43716.1
- UniProtKB/Swiss-Prot
-
Q9ULD2
- Related
- ENSP00000371293.3, ENST00000381869.5
- Conserved Domains (1) summary
-
- cl25732
Location:865 → 1161
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001001931.3 → NP_001001931.1 microtubule-associated tumor suppressor 1 isoform 4
See identical proteins and their annotated locations for NP_001001931.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4), also known as ATIP4, lacks several 5' exons but has an alternate 5' exon, compared to variant 1. It encodes isoform 4 which has a much shorter and distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AB033114, AF121259, AK125188, AL096842, BC142971
- Consensus CDS
-
CCDS43718.1
- UniProtKB/Swiss-Prot
-
Q9ULD2
- Related
- ENSP00000371285.3, ENST00000381861.7
- Conserved Domains (3) summary
-
- cd00187
Location:254 → 364
- TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
- pfam09755
Location:194 → 457
- DUF2046; Uncharacterized conserved protein H4 (DUF2046)
- cl21588
Location:332 → 481
- Snf7; Snf7
-
NM_001166393.2 → NP_001159865.1 microtubule-associated tumor suppressor 1 isoform 6
See identical proteins and their annotated locations for NP_001159865.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6), also known as ATIP2, lacks several 5' exons but has an alternate 5' exon, compared to variant 1. It encodes isoform 6 which has a much shorter and distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC124069, AF121259, AK294860, AL096842, BC136320, DA113649
- Consensus CDS
-
CCDS55204.1
- UniProtKB/Swiss-Prot
-
Q9ULD2
- Related
- ENSP00000445738.1, ENST00000544260.3
- Conserved Domains (2) summary
-
- cd00187
Location:152 → 262
- TOP4c; DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA ...
- cl19219
Location:225 → 301
- DUF342; Protein of unknown function (DUF342)
-
NM_001330470.2 → NP_001317399.1 microtubule-associated tumor suppressor 1 isoform 7
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) represents use of an alternate promoter and therefore differs in the 5' UTR and 5' coding region compared to variant 1. The encoded isoform (7) is shorter than and has a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC124069, AL096842, BC136320, BG719490, CV571752, DA743734
- Consensus CDS
-
CCDS83254.1
- UniProtKB/Swiss-Prot
-
Q9ULD2
- Related
- ENSP00000489288.1, ENST00000634613.1
-
NM_001363057.2 → NP_001349986.1 microtubule-associated tumor suppressor 1 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AB033114, AC124069, AF121259, AK310871, AL096842, AW984317, BC142971, DA214747
- Conserved Domains (1) summary
-
- cl25732
Location:919 → 1193
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001363058.2 → NP_001349987.1 microtubule-associated tumor suppressor 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AB033114, AC027117, AF121259, AK310871, AL096842, BC142971, DA214747, DA339588, DB221458
- Consensus CDS
-
CCDS43717.1
- UniProtKB/Swiss-Prot
- A8K135, B2RBJ6, B3KWJ9, B4DH03, B9EGA1, D3DSP8, Q63HJ6, Q659F4, Q6PK49, Q6URW7, Q8N4M6, Q8WTT9, Q9H7T2, Q9ULD2
- Conserved Domains (1) summary
-
- cl25732
Location:919 → 1215
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001363059.2 → NP_001349988.1 microtubule-associated tumor suppressor 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AB033114, AF121259, AK310871, AL096842, BC142971, DA214747, DA339588, DB221458
- Consensus CDS
-
CCDS43717.1
- UniProtKB/Swiss-Prot
- A8K135, B2RBJ6, B3KWJ9, B4DH03, B9EGA1, D3DSP8, Q63HJ6, Q659F4, Q6PK49, Q6URW7, Q8N4M6, Q8WTT9, Q9H7T2, Q9ULD2
- Related
- ENSP00000509719.1, ENST00000693296.1
- Conserved Domains (1) summary
-
- cl25732
Location:919 → 1215
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001363060.2 → NP_001349989.1 microtubule-associated tumor suppressor 1 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC027117, AC124069, AF121259
- Conserved Domains (1) summary
-
- cl25732
Location:865 → 1139
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001363061.2 → NP_001349990.1 microtubule-associated tumor suppressor 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AB033114, AC027117, AF121259, AK310871, AL096842, BC142971, DA339588, DB221458
- Consensus CDS
-
CCDS43717.1
- UniProtKB/Swiss-Prot
- A8K135, B2RBJ6, B3KWJ9, B4DH03, B9EGA1, D3DSP8, Q63HJ6, Q659F4, Q6PK49, Q6URW7, Q8N4M6, Q8WTT9, Q9H7T2, Q9ULD2
- Conserved Domains (1) summary
-
- cl25732
Location:919 → 1215
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001363062.2 → NP_001349991.1 microtubule-associated tumor suppressor 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AB033114, AF121259, AK310871, AL096842, BC142971, DA214747
- Consensus CDS
-
CCDS43716.1
- Related
- ENSP00000430167.1, ENST00000519263.5
- Conserved Domains (1) summary
-
- cl25732
Location:865 → 1161
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_020749.5 → NP_065800.1 microtubule-associated tumor suppressor 1 isoform 5
See identical proteins and their annotated locations for NP_065800.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5), also known as ATIP1, lacks multiple 5' exons but has an alternate 5' exon, compared to variant 1. It encodes the shortest isoform (5) which has a much shorter and distinct N-terminus, compared to isoform 1. Isoform 5 is a mitochondrial protein.
- Source sequence(s)
-
AB033114, AF121259, AK289750, AL096842, BC098381, BC142971
- Consensus CDS
-
CCDS43719.1
- UniProtKB/Swiss-Prot
-
Q9ULD2
- Related
- ENSP00000297488.6, ENST00000297488.10
- Conserved Domains (1) summary
-
- cl25732
Location:85 → 381
- SMC_N; RecF/RecN/SMC N terminal domain
RNA
-
NR_156437.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AA368734, AC124069, AF121259, BF726246, DA214747, DC381323
- Related
-
ENST00000520196.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
17643802..17801521 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
17910954..18069106 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001001927.1: Suppressed sequence
- Description
- NM_001001927.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.