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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_050926.1 RefSeqGene
- Range
-
128279..410722
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001394062.1 → NP_001380991.1 microtubule-actin cross-linking factor 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL137853, AL356055, AL365277, AL442071
- Consensus CDS
-
CCDS90919.1
- UniProtKB/TrEMBL
- H3BPE1, H3BQK9
- Related
- ENSP00000455274.1, ENST00000564288.6
- Conserved Domains (11) summary
-
- smart00243
Location:7221 → 7296
- GAS2; Growth-Arrest-Specific Protein 2 Domain
- smart00150
Location:6988 → 7112
- SPEC; Spectrin repeats
- smart00250
Location:1764 → 1800
- PLEC; Plectin repeat
- PHA03307
Location:7379 → 7553
- PHA03307; transcriptional regulator ICP4; Provisional
- COG0419
Location:3364 → 3905
- SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
- COG1196
Location:4187 → 5025
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- COG5069
Location:36 → 292
- SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
- cd00051
Location:7146 → 7208
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- cd00176
Location:6326 → 6542
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
- TIGR02168
Location:4877 → 5807
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- cl02488
Location:1159 → 1338
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
-
NM_001397473.1 → NP_001384402.1 microtubule-actin cross-linking factor 1 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AL137853, AL365277
- UniProtKB/Swiss-Prot
- E9PMC2, O94854, Q6ZSB2
-
NM_012090.5 → NP_036222.3 microtubule-actin cross-linking factor 1 isoform 1
See identical proteins and their annotated locations for NP_036222.3
Status: REVIEWED
- Source sequence(s)
-
AB007934, AB029290, AF317696, AK127519, AL442071, DA512687, DR423112
- Consensus CDS
-
CCDS435.1
- UniProtKB/TrEMBL
-
A0A590UJG2
- Related
- ENSP00000354573.2, ENST00000361689.7
- Conserved Domains (8) summary
-
- smart00243
Location:5162 → 5234
- GAS2; Growth-Arrest-Specific Protein 2 Domain
- smart00150
Location:4929 → 5053
- SPEC; Spectrin repeats
- cd00014
Location:79 → 181
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- cd00051
Location:5087 → 5149
- EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
- cd00176
Location:4267 → 4483
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
- pfam05956
Location:5251 → 5428
- APC_basic; APC basic domain
- pfam13499
Location:5088 → 5148
- EF-hand_7; EF-hand domain pair
- cl02488
Location:2046 → 2253
- SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
39084167..39487138
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
38951565..39355064
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_015038.2: Suppressed sequence
- Description
- NM_015038.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
-
NM_033044.3: Suppressed sequence
- Description
- NM_033044.3: This RefSeq was permanently suppressed because the CDS was partial.