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    LOC553492 transcription factor TFIIIB component B'' homolog [ Danio rerio (zebrafish) ]

    Gene ID: 553492, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC553492
    Gene description
    transcription factor TFIIIB component B'' homolog
    See related
    Ensembl:ENSDARG00000117211
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC553492 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (43824016..43859143, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (43223873..43258995, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-204c21.1 Neighboring gene heat shock protein, alpha-crystallin-related, b11 Neighboring gene methylcrotonyl-CoA carboxylase subunit 2 Neighboring gene zgc:112966 Neighboring gene si:dkey-84j12.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    transcription factor TFIIIB component B'' homolog; uro-adherence factor A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      43824016..43859143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476612.2 → XP_021332287.1  uro-adherence factor A isoform X3

      UniProtKB/TrEMBL
      A0A8M9PLE0
      Conserved Domains (2) summary
      pfam15963
      Location:395 → 475
      Myb_DNA-bind_7; Myb DNA-binding like
      cl28033
      Location:14 → 246
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    2. XM_021476611.2 → XP_021332286.1  transcription factor TFIIIB component B'' homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q9Q0
      Conserved Domains (2) summary
      pfam15963
      Location:395 → 475
      Myb_DNA-bind_7; Myb DNA-binding like
      cl28033
      Location:14 → 246
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    3. XM_009301727.4 → XP_009300002.1  transcription factor TFIIIB component B'' homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M3AZV6
      Related
      ENSDART00000194543.1
      Conserved Domains (2) summary
      pfam09528
      Location:748 → 1191
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      pfam15963
      Location:395 → 478
      Myb_DNA-bind_7; Myb DNA-binding like
    Nucleotide Protein Strain
    Heading Accession and Version

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