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    si:dkey-171c9.3 si:dkey-171c9.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100005938, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-171c9.3provided by ZNC
    Official Full Name
    si:dkey-171c9.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-372
    See related
    Ensembl:ENSDARG00000102228 AllianceGenome:ZFIN:ZDB-GENE-141216-372
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable protein kinase A binding activity. Predicted to be involved in protein localization. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-171c9.3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (22968756..22981761, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (22697599..22710639, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene chloride channel, voltage-sensitive 5b Neighboring gene TNF superfamily member 10, like Neighboring gene cyclin B3 Neighboring gene uncharacterized LOC137490270

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein kinase A binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkey-171c9.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      22968756..22981761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477784.2 → XP_021333459.1  uncharacterized protein si:dkey-171c9.3

      UniProtKB/TrEMBL
      A0A0R4IUW3, A0A8M1PZB7
      Related
      ENSDARP00000138265.1, ENSDART00000167565.2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394688.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      94902..107907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001339501.8 → XP_001339537.1  uncharacterized protein si:dkey-171c9.3

      UniProtKB/TrEMBL
      A0A0R4IUW3, A0A8M1PZB7
    Nucleotide Protein Strain
    Heading Accession and Version

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