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    si:ch73-359m17.2 si:ch73-359m17.2 [ Danio rerio (zebrafish) ]

    Gene ID: 799904, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch73-359m17.2provided by ZNC
    Official Full Name
    si:ch73-359m17.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141222-90
    See related
    Ensembl:ENSDARG00000102119 AllianceGenome:ZFIN:ZDB-GENE-141222-90
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable fucose binding activity. Predicted to be involved in anatomical structure morphogenesis; regulation of cellular defense response; and regulation of complement activation, lectin pathway. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-359m17.2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (48382961..48391407, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (48723567..48732013, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883623 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase ABHD5 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene testis and ovary specific TOPAZ 1 Neighboring gene si:ch1073-376c22.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of a binary tandem domain F-type lectin from striped bass (Morone saxatilis). Odom EW, et al. J Biol Chem, 2006 Jan 20. PMID 16251191
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables fucose binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of cellular defense response IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of complement activation, lectin pathway IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC799904
    Names
    III-FBPL

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083874.1 → NP_001077343.1  uncharacterized protein LOC799904 precursor

      See identical proteins and their annotated locations for NP_001077343.1

      Status: PREDICTED

      Source sequence(s)
      DQ141330
      UniProtKB/TrEMBL
      Q2LK84
      Related
      ENSDARP00000140121.1, ENSDART00000169577.2
      Conserved Domains (1) summary
      cl23730
      Location:166 → 304
      F5_F8_type_C; F5/8 type C domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      48382961..48391407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170130.5 → XP_005170187.1  uncharacterized protein LOC799904 isoform X1

      See identical proteins and their annotated locations for XP_005170187.1

      UniProtKB/TrEMBL
      A0A8M2BHH5
      Conserved Domains (1) summary
      cl23730
      Location:167 → 305
      F5_F8_type_C; F5/8 type C domain

    2. XM_021468147.2 → XP_021323822.1  uncharacterized protein LOC799904 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHH5
      Conserved Domains (1) summary
      cl23730
      Location:167 → 305
      F5_F8_type_C; F5/8 type C domain
    Nucleotide Protein Strain
    Heading Accession and Version

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