U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ankrd53 ankyrin repeat domain 53 [ Danio rerio (zebrafish) ]

    Gene ID: 567792, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ankrd53provided by ZNC
    Official Full Name
    ankyrin repeat domain 53provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141222-28
    See related
    Ensembl:ENSDARG00000098445 AllianceGenome:ZFIN:ZDB-GENE-141222-28
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-1o7.2
    Summary
    Predicted to act upstream of or within regulation of mitotic cytokinesis. Orthologous to human ANKRD53 (ankyrin repeat domain 53). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ankrd53 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8670456..8681183)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8424501..8445775)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496077 Neighboring gene jacalin 2 Neighboring gene uncharacterized LOC137496074 Neighboring gene testis expressed 261 Neighboring gene shootin 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of mitotic cytokinesis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat domain-containing protein 53

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      8670456..8681183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_691094.9 → XP_696186.2  ankyrin repeat domain-containing protein 53 isoform X1

      See identical proteins and their annotated locations for XP_696186.2

      UniProtKB/TrEMBL
      A0A0R4IMF1, A0A8N7UV80
      Related
      ENSDARP00000135503.1, ENSDART00000164195.2
      Conserved Domains (4) summary
      cd00204
      Location:46 → 174
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:55 → 152
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:22 → 71
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:50 → 82
      ANK; ANK repeat [structural motif]

    2. XM_009302934.4 → XP_009301209.1  ankyrin repeat domain-containing protein 53 isoform X2

      UniProtKB/TrEMBL
      A0A8M3BAS8
      Conserved Domains (3) summary
      cd00204
      Location:22 → 117
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:23 → 117
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:50 → 82
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials