rimkla ribosomal modification protein rimK-like family member A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rimklaprovided by ZNC
Official Full Name: ribosomal modification protein rimK-like family member Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040912-20
See related: Ensembl:ENSDARG00000016830 AllianceGenome:ZFIN:ZDB-GENE-040912-20
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: naags; rimklb; zgc:92164; wu:fc60e09
Summary: Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity and citrate-L-glutamate ligase activity. Predicted to act upstream of or within protein modification process. Predicted to be active in cytoplasm. Orthologous to several human genes including RIMKLB (ribosomal modification protein rimK like family member B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (26868105..26887315)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (26848966..26868176)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc60e09 (e-PCR)
- UniSTS:189463

fc09h02.x1 (e-PCR)
- UniSTS:192407

fc09h02.x1 (e-PCR)
- UniSTS:192408

fc24a01.y1 (e-PCR)
- UniSTS:193176

fe18g10.x1 (e-PCR)
- UniSTS:196287

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables N-acetyl-L-aspartate-L-glutamate ligase activity	IBA Inferred from Biological aspect of Ancestor more info
enables N-acetyl-L-aspartate-L-glutamate ligase activity	ISS Inferred from Sequence or Structural Similarity more info
enables citrate-L-glutamate ligase activity	ISS Inferred from Sequence or Structural Similarity more info
enables ligase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein modification process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: beta-citrylglutamate synthase B

Names: N-acetyl-aspartyl-glutamate synthetase B; N-acetyl-aspartylglutamate synthetase B; N-acetylaspartyl-glutamate synthetase B; NAAG synthetase B; beta-citryl-glutamate synthase B; ribosomal protein S6 modification-like protein B

NP_001004554.1

EC 6.3.1.17

EC 6.3.2.41

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.