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    si:dkey-29p10.4 si:dkey-29p10.4 [ Danio rerio (zebrafish) ]

    Gene ID: 571522, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-29p10.4provided by ZNC
    Official Full Name
    si:dkey-29p10.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050420-117
    See related
    Ensembl:ENSDARG00000017173 AllianceGenome:ZFIN:ZDB-GENE-050420-117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ligase activity and zinc ion binding activity. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-29p10.4 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (27337966..27359669)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (27355597..27377114)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene zgc:56106 Neighboring gene CD81 molecule b Neighboring gene uncharacterized LOC137488288 Neighboring gene tumor protein p53 inducible protein 11b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tripartite motif-containing protein 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      27337966..27359669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_695120.8 → XP_700212.1  tripartite motif-containing protein 14 isoform X1

      UniProtKB/TrEMBL
      A0A8N7TE72, A3KQE0
      Related
      ENSDARP00000115103.1, ENSDART00000136172.2
      Conserved Domains (3) summary
      cd00162
      Location:10 → 55
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00643
      Location:311 → 352
      zf-B_box; B-box zinc finger
      cl02614
      Location:537 → 708
      SPRY; SPRY domain

    2. XM_068214910.1 → XP_068071011.1  tripartite motif-containing protein 14 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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