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    znf576.2 zinc finger protein 576, tandem duplicate 2 [ Danio rerio (zebrafish) ]

    Gene ID: 563587, updated on 2-Nov-2024

    Summary

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    Official Symbol
    znf576.2provided by ZNC
    Official Full Name
    zinc finger protein 576, tandem duplicate 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1738
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-1738
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb79b01; wu:fb79b01; zgc:175096
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human ZNF576 (zinc finger protein 576). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See znf576.2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25163443..25170162)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25222451..25254813)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene trypsin-2-like Neighboring gene zinc finger protein 576, tandem duplicate 1 Neighboring gene wu:fe05a04 Neighboring gene hematopoietic cell signal transducer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 576.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114425.2 → NP_001107897.1  zinc finger protein 576.2

      See identical proteins and their annotated locations for NP_001107897.1

      Status: VALIDATED

      Source sequence(s)
      BX571853, CU062628
      UniProtKB/TrEMBL
      A9JTF6
      Conserved Domains (3) summary
      sd00017
      Location:305 → 326
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:360 → 382
      zf-C2H2; Zinc finger, C2H2 type
      pfam15909
      Location:94 → 168
      zf-C2H2_8; C2H2-type zinc ribbon

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      25163443..25170162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213983.1 → XP_068070084.1  zinc finger protein 576.2 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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